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Creating an OpenAI based chatbot with Clinical Trials Database Part 2

Abhik Seal
11 min readAug 10, 2024

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My last blog post I show how OpenAI enabled database chat engine help to analyze clinical trials databases. It highlights how such technology can uncover hidden insights by enabling users to interact with the data using conversational language. The key points what i have seen:

  1. Enhanced Data Accessibility: The chat engine allows users to ask complex questions in plain language, making it easier to access and interpret data from clinical trials.
  2. Improved Efficiency: chat engine significantly speeds up the process of extracting valuable information from large datasets.
  3. Actionable Insights: The tool helps in identifying trends and patterns that might be missed through traditional data analysis methods, thus facilitating more informed decision-making.

This post is the extension of my previous post where i give a detailed walk through of integrating a Natural Language Processing (NLP) based chat engine with a Clinical Trial (AACT) PostgreSQL database and this can be extended to any sql database as we have SQLAlchemy. Below, I’ll break down the code structure you provided, explain why each component is needed, and why it’s implemented this way. The code is posted on my github repo to use . This is a minimal code to get started with the database chat.

This function establishes a connection to the PostgreSQL database using the connection parameters defined in the Config object.

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Abhik Seal
Abhik Seal

Written by Abhik Seal

Data Science / Cheminformatician x-AbbVie , I try to make complicated things looks easier and understandable www.linkedin.com/in/abseal/

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